AIControl data repository

Binned public control data files

1. Complete set of 440 public controls that recreate the results in our manuscript.

• forward.data100.nodup.tar.bz2
• reverse.data100.nodup.tar.bz2

2. Complete set of 440 public controls that include duplicate reads.

• forward.data100.dup.tar.bz2
• reverse.data100.dup.tar.bz2

3. Reduced set of 273 public controls without duplicate reads

• forward.data100.reduced.nodup.tar.bz2
• reverse.data100.reduced.nodup.tar.bz2

4. Reduced set of 273 public controls with duplicate reads

• forward.data100.reduced.dup.tar.bz2
• reverse.data100.reduced.dup.tar.bz2

Bowtie2 reference database files for the UCSC hg38 genome

• bowtie2ref.tar.bz2

Sample fastq and sorted bam files

1. example1

• example.fastq
• example.sorted.bam
• example.narrowPeak

2. example2

• example2.fastq
• example2.sorted.bam
• example2.narrowPeak

3. example3 (smallest toy example with 4 reads)

• example3.fastq
• example3.sorted.bam
• example3.narrowPeak (no peaks are identified)