AIControl data repository

Binned public control data files

Download one of the following pairs of files to run AIControl

1. Complete set of 440 public controls that recreate the results in our manuscript.

• forward.data100.nodup.tar.bz2
• reverse.data100.nodup.tar.bz2

2. Complete set of 440 public controls that include duplicate reads.

• forward.data100.dup.tar.bz2
• reverse.data100.dup.tar.bz2

3. Reduced set of 273 public controls without duplicate reads

• forward.data100.reduced.nodup.tar.bz2
• reverse.data100.reduced.nodup.tar.bz2

4. Reduced set of 273 public controls with duplicate reads

• forward.data100.reduced.dup.tar.bz2
• reverse.data100.reduced.dup.tar.bz2

Bowtie2 reference database files for the UCSC hg38 genome

• bowtie2ref.tar.bz2

Sample fastq and sorted bam files

Download one of the following files to test AIControl installation

1. example1

• example.fastq
• example.sorted.bam
• example.narrowPeak

2. example2

• example2.fastq
• example2.sorted.bam
• example2.narrowPeak

3. example3 (smallest toy example with 4 reads)

• example3.fastq
• example3.sorted.bam
• example3.narrowPeak (no peaks are identified)